STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV08422.1Putative lipoprotein; Pfam:pfam03401 Tripartite tricarboxylate transporter family receptor. (335 aa)    
Predicted Functional Partners:
ALV06059.1
Pfam:pfam01970 Tripartite tricarboxylate transporter TctA family.
 
  
 0.870
ALV06166.1
Pfam:pfam01970 Tripartite tricarboxylate transporter TctA family.
 
  
 0.870
ALV08217.1
Hypothetical protein; Pfam:pfam01970 Tripartite tricarboxylate transporter TctA family.
 
  
 0.870
ALV06165.1
Putative membrane protein; Pfam:pfam07331 Tripartite tricarboxylate transporter TctB family.
 
  
 0.849
ALV06058.1
Pfam:pfam07331 Tripartite tricarboxylate transporter TctB family.
 
  
 0.569
ALV08423.1
GntR family transcriptional regulator; Pfam:pfam07729 FCD domain.
 
     0.516
ALV08421.1
Glucarate dehydratase; Pfam:pfam13378 Enolase C-terminal domain-like; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.479
ALV08420.1
ABC transporter substrate-binding protein; Pfam:pfam03401 Tripartite tricarboxylate transporter family receptor.
 
    
0.412
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.