STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV08484.1Regulatory protein MarR; Pfam:pfam13412 Winged helix-turn-helix DNA-binding. (127 aa)    
Predicted Functional Partners:
ALV08485.1
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase; Pfam:pfam00970 Oxidoreductase FAD-binding domain.
 
   
 0.810
ALV08486.1
Glucose-1-phosphate cytidylyltransferase; Pfam:pfam00483 Nucleotidyl transferase.
       0.687
ALV08488.1
Lipopolysaccharide biosynthesis protein RfbH; Pfam:pfam01041 DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family.
       0.680
ALV08487.1
CDP-glucose 4,6-dehydratase; Pfam:pfam01370 NAD dependent epimerase/dehydratase family.
       0.678
ALV08489.1
Pfam:pfam00908 dTDP-4-dehydrorhamnose 3,5-epimerase.
       0.663
ALV08490.1
Pfam:pfam01370 NAD dependent epimerase/dehydratase family.
       0.637
ALV08483.1
Lipopolysaccharide biosynthesis protein; Pfam:pfam02706 Chain length determinant protein.
       0.610
ALV08482.1
Sugar ABC transporter substrate-binding protein; Pfam:pfam02563 Polysaccharide biosynthesis/export protein.
       0.571
ALV05094.1
Amino acid ABC transporter permease; Pfam:pfam04069 Substrate binding domain of ABC-type glycine betaine transport system.
  
  
 0.547
ALV08491.1
Hypothetical protein; Pfam:pfam01943 Polysaccharide biosynthesis protein.
  
    0.513
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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