STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV08598.1Hypothetical protein. (196 aa)    
Predicted Functional Partners:
ALV08599.1
Thioredoxin family protein, putative; Pfam:pfam00578 AhpC/TSA family.
   
   0.818
mtgA
Penicillin-binding protein F; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
     
 0.814
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
       0.804
ALV08595.1
Energy transducer TonB; Pfam:pfam13103 TonB C terminal.
 
     0.755
ALV08594.1
Ribonuclease II; Pfam:pfam00773 RNB domain.
     
 0.728
ALV05046.1
Putative nucleic acid-binding protein.
  
     0.641
ALV05444.1
Pfam:pfam03934 Type II secretion system (T2SS), protein K.
  
     0.610
ALV05441.1
Putative general secretory pathway N transmembrane protein.
  
     0.589
ALV08577.1
Chemotaxis protein CheW; Pfam:pfam01584 CheW-like domain.
  
     0.568
ALV09023.1
Pfam:pfam01337 Barstar (barnase inhibitor).
  
     0.568
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.