STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV08687.1Signal peptide protein; Pfam:pfam12697 Alpha/beta hydrolase family. (252 aa)    
Predicted Functional Partners:
ALV08688.1
Pfam:pfam00196 Bacterial regulatory proteins, luxR family.
       0.795
ALV08689.1
Thioredoxin-like domain-containing protein; Pfam:pfam13905 Thioredoxin-like.
 
 
   0.680
ALV06400.1
3-beta hydroxysteroid dehydrogenase; Pfam:pfam01370 NAD dependent epimerase/dehydratase family.
  
 
   0.669
ALV08881.1
Esterase; Pfam:pfam12697 Alpha/beta hydrolase family.
  
     0.619
apaH
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.500
ALV04940.1
Oxidoreductase; Pfam:pfam00106 short chain dehydrogenase.
  
 
   0.460
ALV07150.1
Zn-finger-containing protein; Pfam:pfam02148 Zn-finger in ubiquitin-hydrolases and other protein.
  
     0.439
ALV05366.1
Thioredoxin reductase; Pfam:pfam07992 Pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.421
ALV07356.1
Pfam:pfam00106 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.408
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.