STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV08854.1Putative transcriptional regulator; Pfam:pfam12840 Helix-turn-helix domain. (232 aa)    
Predicted Functional Partners:
ALV08856.1
Pfam:pfam03992 Antibiotic biosynthesis monooxygenase.
 
     0.888
ALV08853.1
Pfam:pfam01904 Protein of unknown function DUF72.
       0.780
ALV08855.1
Hypothetical protein.
       0.611
ALV08797.1
Metal ABC transporter ATPase; Pfam:pfam00122 E1-E2 ATPase.
  
  
 0.561
ALV08852.1
GGDEF domain-containing protein; Pfam:pfam00990 GGDEF domain.
       0.442
ALV08862.1
Pfam:pfam00583 Acetyltransferase (GNAT) family.
  
    0.429
ALV08857.1
Pfam:pfam05981 CreA protein.
       0.421
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.