STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV09076.1Pfam:pfam07769 psiF repeat. (108 aa)    
Predicted Functional Partners:
ALV07320.1
Hypothetical protein.
   
    0.824
ALV07061.1
Hypothetical protein.
   
    0.712
ALV09077.1
Serine/threonine-protein kinase PknB; Pfam:pfam00069 Protein kinase domain.
       0.577
ALV08769.1
Putative methyl-accepting chemotaxis protein; Pfam:pfam05957 Bacterial protein of unknown function (DUF883).
  
    0.560
ALV07488.1
Exported protein; Pfam:pfam13618 Gluconate 2-dehydrogenase subunit 3.
  
     0.547
recX
Hypothetical protein; Modulates RecA activity; Belongs to the RecX family.
 
     0.531
ALV04611.1
Putative Ser protein kinase; Pfam:pfam08298 PrkA AAA domain.
   
    0.520
ALV04609.1
Pfam:pfam04293 SpoVR like protein.
   
    0.502
ALV07487.1
Choline dehydrogenase-related flavoprotein; Pfam:pfam05199 GMC oxidoreductase.
  
     0.477
ALV05659.1
17 kDa surface antigen; Pfam:pfam05433 Glycine zipper 2TM domain.
  
     0.475
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.