STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV09076.1Pfam:pfam07769 psiF repeat. (108 aa)    
Predicted Functional Partners:
ALV07320.1
Hypothetical protein.
   
    0.792
ALV07061.1
Hypothetical protein.
   
    0.600
ALV09077.1
Serine/threonine-protein kinase PknB; Pfam:pfam00069 Protein kinase domain.
       0.593
ALV07488.1
Exported protein; Pfam:pfam13618 Gluconate 2-dehydrogenase subunit 3.
  
     0.547
ALV08769.1
Putative methyl-accepting chemotaxis protein; Pfam:pfam05957 Bacterial protein of unknown function (DUF883).
  
    0.541
recX
Hypothetical protein; Modulates RecA activity; Belongs to the RecX family.
 
     0.533
ALV08435.1
Bacterioferritin; Iron-storage protein.
  
    0.507
argS
Arginine--tRNA ligase; Pfam:pfam00750 tRNA synthetases class I (R).
       0.496
ALV09079.1
Membrane protein; Pfam:pfam05036 Sporulation related domain.
       0.496
ALV07487.1
Choline dehydrogenase-related flavoprotein; Pfam:pfam05199 GMC oxidoreductase.
  
     0.477
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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