STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptAPutative lipopolysaccharide transport protein A LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. (205 aa)    
Predicted Functional Partners:
ALV09082.1
Lipopolysaccharide export system ATP-binding protein LptB; Pfam:pfam00005 ABC transporter.
  
  
 0.976
ALV09261.1
Hypothetical protein; Pfam:pfam06835 Lipopolysaccharide-assembly, LptC-related.
  
 
 0.960
lptD
LPS-assembly protein LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 0.838
ALV09083.1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.799
ALV08594.1
Ribonuclease II; Pfam:pfam00773 RNB domain.
  
     0.719
ALV08993.1
Hypothetical protein; Pfam:pfam14334 Domain of unknown function (DUF4390).
  
     0.662
ALV08272.1
Pfam:pfam00293 NUDIX domain.
  
     0.643
ALV06388.1
Pfam:pfam06804 NlpB/DapX lipoprotein.
  
  
 0.638
ALV09084.1
Pfam:pfam01170 Putative RNA methylase family UPF0020; Belongs to the methyltransferase superfamily.
 
     0.614
ALV06131.1
Rieske (2Fe-2S) protein; Pfam:pfam00848 Ring hydroxylating alpha subunit (catalytic domain).
  
     0.604
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.