STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV09091.1Hypothetical protein; Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (643 aa)    
Predicted Functional Partners:
ALV05770.1
LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.
 
   0.838
ALV06594.1
Pfam:pfam00072 Response regulator receiver domain.
 
   0.836
ALV06886.1
LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.
 
   0.836
ALV07479.1
Hypothetical protein; Pfam:pfam00196 Bacterial regulatory proteins, luxR family.
 
   0.836
ALV08903.1
Pfam:pfam00072 Response regulator receiver domain.
 
   0.835
ALV08529.1
Pfam:pfam00196 Bacterial regulatory proteins, luxR family.
 
   0.818
ALV07595.1
Pfam:pfam00196 Bacterial regulatory proteins, luxR family.
 
   0.816
ALV07344.1
Pfam:pfam00196 Bacterial regulatory proteins, luxR family.
 
   0.815
ALV08051.1
LuxR family transcriptional regulator; Pfam:pfam00072 Response regulator receiver domain.
 
   0.805
ALV07134.1
Two component transcriptional regulator, LuxR family; Pfam:pfam00072 Response regulator receiver domain.
 
   0.802
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.