STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV09178.1Cobalt-zinc-cadmium resistance protein CzcI. (114 aa)    
Predicted Functional Partners:
ALV09177.1
Pfam:pfam02321 Outer membrane efflux protein.
       0.576
ALV09179.1
Putative TonB-dependent receptor; Pfam:pfam00593 TonB dependent receptor.
       0.568
ALV08696.1
Cytochrome C biogenesis protein; Pfam:pfam13905 Thioredoxin-like.
   
  
 0.518
ALV09175.1
Heavy metal efflux pump, CzcA family; Pfam:pfam00873 AcrB/AcrD/AcrF family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.489
ALV09176.1
Cytochrome C peroxidase; Pfam:pfam13437 HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.451
ALV07056.1
Rhs element Vgr protein; Pfam:pfam04717 Phage-related baseplate assembly protein.
   
  
 0.449
ALV07058.1
GPW/gp25 family protein; Pfam:pfam04965 Gene 25-like lysozyme.
   
  
 0.436
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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