STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV09254.1Pfam:pfam06123 Inner membrane protein CreD. (451 aa)    
Predicted Functional Partners:
ALV09255.1
Pfam:pfam02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
   
 0.914
ALV09253.1
Alcohol dehydrogenase [acceptor]; Pfam:pfam05199 GMC oxidoreductase.
       0.695
ALV09256.1
Pfam:pfam00072 Response regulator receiver domain.
 
     0.683
ALV08659.1
Hypothetical protein; Pfam:pfam14258 Domain of unknown function (DUF4350).
  
     0.591
RD2015_46
Pfam:pfam01139 tRNA-splicing ligase RtcB.
  
     0.517
ALV08661.1
Pfam:pfam01882 Protein of unknown function DUF58.
  
     0.487
ALV08658.1
Pfam:pfam01944 Integral membrane protein DUF95.
  
     0.486
ALV07668.1
Glyoxalase/bleomycin resistance; Pfam:pfam12681 Glyoxalase-like domain.
   
    0.469
ALV05514.1
Geranylgeranyl reductase; Pfam:pfam01494 FAD binding domain.
   
    0.426
ALV08834.1
Nucleotidyltransferase; Pfam:pfam10127 Predicted nucleotidyltransferase.
  
     0.426
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.