STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV05084.1Hypothetical protein; Pfam:pfam04352 ProQ/FINO family. (355 aa)    
Predicted Functional Partners:
ALV04677.1
YiaA/B two helix domain protein.
  
     0.692
ALV07031.1
Pfam:pfam14583 Oligogalacturonate lyase.
  
    0.648
ALV05083.1
Pfam:pfam03942 DTW domain.
 
     0.590
ALV08831.1
Hypothetical protein.
  
     0.530
smg
Pfam:pfam04361 Protein of unknown function (DUF494); Belongs to the Smg family.
  
     0.521
ALV05085.1
Hypothetical protein.
       0.493
ALV05132.1
Esterase, SGNH hydrolase-type domain protein.
  
     0.467
ALV09172.1
Hypothetical protein; Pfam:pfam14344 Domain of unknown function (DUF4397).
  
     0.456
ALV05445.1
General secretion pathway protein GspJ; Pfam:pfam11612 Type II secretion system (T2SS), protein J.
  
     0.449
cpoB
Tol-pal system protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
    0.448
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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