STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV05102.1Pfam:pfam02481 DNA recombination-mediator protein A. (414 aa)    
Predicted Functional Partners:
ALV08553.1
DNA utilization protein GntX; Pfam:pfam00156 Phosphoribosyl transferase domain.
 
 
 0.916
ALV06434.1
Putative transporter DNA uptake transmembrane protein; Pfam:pfam03772 Competence protein.
 
  
 0.903
ALV05493.1
Peptidase A24; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.886
ALV04876.1
Pfam:pfam01078 Magnesium chelatase, subunit ChlI.
 
 0.843
ALV06557.1
Pfam:pfam07228 Stage II sporulation protein E (SpoIIE).
  
    0.834
ALV05103.1
Putative signal peptide protein; Pfam:pfam01476 LysM domain.
       0.745
ALV08325.1
Pfam:pfam13641 Glycosyltransferase like family 2.
  
    0.723
ALV09109.1
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
  
 0.703
ALV08149.1
DNA repair protein; Pfam:pfam04002 RadC-like JAB domain; Belongs to the UPF0758 family.
  
  
 0.661
recA
Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 
 0.656
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.