STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV05195.1Alpha-amylase; Pfam:pfam00128 Alpha amylase, catalytic domain. (624 aa)    
Predicted Functional Partners:
ALV08105.1
Alpha-1,6-glucosidase; Pfam:pfam11852 Domain of unknown function (DUF3372); Belongs to the glycosyl hydrolase 13 family.
 
 0.983
glgB
Glycogen branching protein; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
 0.952
ALV08114.1
Glycogen debranching enzyme; Pfam:pfam02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain); Belongs to the glycosyl hydrolase 13 family.
 
 
 0.945
ALV08116.1
Glycogen phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 0.944
ALV08113.1
Pfam:pfam02446 4-alpha-glucanotransferase.
  
 
 0.934
ALV08106.1
Pfam:pfam00128 Alpha amylase, catalytic domain.
  
  
 0.928
ALV08121.1
Amylopullulanase; Pfam:pfam00128 Alpha amylase, catalytic domain.
  
  
 0.920
ALV06632.1
Pfam:pfam13520 Amino acid permease.
   
 0.803
ALV07949.1
Lectin.
  
   
 0.649
ALV07831.1
Endoglucanase; Pfam:pfam00759 Glycosyl hydrolase family 9.
  
   
 0.647
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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