STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV05254.1Pfam:pfam13419 Haloacid dehalogenase-like hydrolase. (236 aa)    
Predicted Functional Partners:
RD2015_41
Pfam:pfam12697 Alpha/beta hydrolase family.
  
 
 0.902
ALV08922.1
Pfam:pfam00171 Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
    
  0.900
ALV05253.1
Hypothetical protein.
       0.563
ALV05136.1
Pfam:pfam00583 Acetyltransferase (GNAT) family.
  
    0.525
ALV05252.1
Pfam:pfam00583 Acetyltransferase (GNAT) family.
  
    0.448
ALV06859.1
Transmembrane ABC transporter protein, major intrinsic protein; Pfam:pfam00230 Major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.433
ALV06830.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.422
Your Current Organism:
Roseateles depolymerans
NCBI taxonomy Id: 76731
Other names: CCUG 52219, DSM 11813, R. depolymerans, proteobacterium DSM11813, proteobacterium DSM11814, strain 61A
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