STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFC85484.1EAL domain-containing protein; PFAM: EAL domain; Sensors of blue-light using FAD. (439 aa)    
Predicted Functional Partners:
AFC87311.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
 
 
 0.828
AFC86137.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
 0.817
AFC85430.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain; manually curated.
  
 0.807
AFC87005.1
PFAM: GGDEF domain; MASE2 domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
 0.807
AFC87525.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
  
 0.807
AFC85303.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
  
 0.806
AFC86022.1
PFAM: GGDEF domain; Tetratricopeptide repeat; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
  
 0.806
AFC86754.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
    0.806
AFC86827.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
 
  
 0.806
AFC87197.1
PFAM: GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
 0.806
Your Current Organism:
Frateuria aurantia
NCBI taxonomy Id: 767434
Other names: F. aurantia DSM 6220, Frateuria aurantia DSM 6220, Frateuria aurantia IFO 3245, Frateuria aurantia str. DSM 6220, Frateuria aurantia strain DSM 6220
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.