Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AFC86384.1TIGR02453 family protein; PFAM: Conserved hypothetical protein (DUF2461); TIGRFAM: TIGR02453 family protein. (228 aa)    
Predicted Functional Partners:
AFC86383.1
PFAM: Exonuclease; Exonuclease C-terminal.
       0.804
AFC87109.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
  
     0.517
AFC86626.1
Hypothetical protein.
 
     0.471
AFC84957.1
PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.470
AFC85275.1
Polyketide cyclase / dehydrase and lipid transport.
 
     0.468
AFC84952.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
  
     0.466
AFC87110.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
  
     0.456
AFC84954.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
  
     0.410
Your Current Organism:
Frateuria aurantia
NCBI taxonomy Id: 767434
Other names: F. aurantia DSM 6220, Frateuria aurantia DSM 6220, Frateuria aurantia IFO 3245, Frateuria aurantia str. DSM 6220, Frateuria aurantia strain DSM 6220
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