STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFC86573.1TIGRFAM: type IV pilus modification protein PilV; prepilin-type N-terminal cleavage/methylation domain. (183 aa)    
Predicted Functional Partners:
AFC86572.1
Hypothetical protein.
 
  
 0.992
AFC86570.1
Tfp pilus assembly protein, tip-associated adhesin PilY1; PFAM: Neisseria PilC protein.
 
  
 0.987
AFC86571.1
Tfp pilus assembly protein PilX.
 
  
 0.987
AFC86569.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.973
AFC86568.1
PFAM: Prokaryotic N-terminal methylation motif; Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.966
AFC86834.1
PFAM: Type II transport protein GspH; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.885
AFC87116.1
PFAM: Pilus assembly protein, PilO.
 
   
 0.829
AFC87115.1
PFAM: Pilus assembly protein, PilP.
  
  
 0.817
AFC87117.1
PFAM: Fimbrial assembly protein (PilN).
 
   
 0.814
AFC87118.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM.
 
   
 0.788
Your Current Organism:
Frateuria aurantia
NCBI taxonomy Id: 767434
Other names: F. aurantia DSM 6220, Frateuria aurantia DSM 6220, Frateuria aurantia IFO 3245, Frateuria aurantia str. DSM 6220, Frateuria aurantia strain DSM 6220
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.