Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFC87163.1Short-chain dehydrogenase of unknown substrate specificity; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (261 aa)    
Predicted Functional Partners:
AFC87162.1
PFAM: Capsule polysaccharide biosynthesis protein.
     0.971
AFC87165.1
Polyketide synthase family protein; PFAM: Acyl transferase domain; Phosphopantetheine attachment site; KR domain; Alcohol dehydrogenase GroES-like domain; Beta-ketoacyl synthase, N-terminal domain; Zinc-binding dehydrogenase; Beta-ketoacyl synthase, C-terminal domain.
 
 
 0.924
AFC87164.1
Phosphoglycerol transferase family protein, alkaline phosphatase superfamily; PFAM: Sulfatase.
 
     0.883
AFC87167.1
7-keto-8-aminopelargonate synthetase-like enzyme; PFAM: Aminotransferase class I and II; TIGRFAM: 8-amino-7-oxononanoate synthase.
 
 
   0.728
AFC87160.1
ABC-type polysaccharide/polyol phosphate export systems, permease component; PFAM: ABC-2 type transporter.
 
     0.719
AFC87161.1
TIGRFAM: polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family.
 
     0.718
AFC87168.1
PFAM: Acetyltransferase (GNAT) family.
 
     0.634
lpxC-2
UDP-3-O-acyl-N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
       0.601
AFC87159.1
ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
     0.587
AFC85014.1
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase.
  
 
   0.527
Your Current Organism:
Frateuria aurantia
NCBI taxonomy Id: 767434
Other names: F. aurantia DSM 6220, Frateuria aurantia DSM 6220, Frateuria aurantia IFO 3245, Frateuria aurantia str. DSM 6220, Frateuria aurantia strain DSM 6220
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