STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFC87349.1PFAM: Glutamine cyclotransferase. (261 aa)    
Predicted Functional Partners:
AFC87348.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; DbpA RNA binding domain; DEAD/DEAH box helicase; Belongs to the DEAD box helicase family.
    
 0.590
AFC87352.1
PFAM: Serine carboxypeptidase.
 
     0.472
AFC87351.1
PFAM: Serine carboxypeptidase.
 
     0.467
AFC87350.1
Aspartyl/asparaginyl beta-hydroxylase-like dioxygenase; PFAM: Aspartyl/Asparaginyl beta-hydroxylase.
       0.453
AFC87347.1
NADH dehydrogenase, FAD-containing subunit; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
       0.422
Your Current Organism:
Frateuria aurantia
NCBI taxonomy Id: 767434
Other names: F. aurantia DSM 6220, Frateuria aurantia DSM 6220, Frateuria aurantia IFO 3245, Frateuria aurantia str. DSM 6220, Frateuria aurantia strain DSM 6220
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.