STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFC87530.1PFAM: Radical SAM superfamily; B12 binding domain; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ. (475 aa)    
Predicted Functional Partners:
AFC87531.1
PFAM: YdjC-like protein; TIGRFAM: hopanoid biosynthesis associated protein HpnK.
 
   
 0.926
AFC87529.1
PFAM: Glycosyl transferase family 2; TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI.
 
   
 0.915
AFC87532.1
Putative membrane protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: putative membrane protein.
 
    0.915
AFC87527.1
PFAM: Radical SAM superfamily; Domain of unknown function (DUF3463); TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH.
 
  
 0.834
AFC87526.1
PFAM: Glycosyl transferase family 2; TIGRFAM: hopene-associated glycosyltransferase HpnB.
 
     0.800
AFC84706.1
Hypothetical protein.
 
     0.764
AFC86840.1
PFAM: MMPL family; TIGRFAM: hopanoid biosynthesis associated RND transporter like protein HpnN.
 
     0.756
AFC87533.1
PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: hopanoid-associated sugar epimerase.
  
     0.751
AFC85227.1
Squalene-hopene cyclase; PFAM: Prenyltransferase and squalene oxidase repeat; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase.
 
   
 0.748
AFC87535.1
Squalene-hopene cyclase; PFAM: Prenyltransferase and squalene oxidase repeat; TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase.
 
   
 0.747
Your Current Organism:
Frateuria aurantia
NCBI taxonomy Id: 767434
Other names: F. aurantia DSM 6220, Frateuria aurantia DSM 6220, Frateuria aurantia IFO 3245, Frateuria aurantia str. DSM 6220, Frateuria aurantia strain DSM 6220
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