STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS07755.1L-threonine aldolase. (335 aa)    
Predicted Functional Partners:
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
 
 0.949
SFS00261.1
Cytochrome P450.
  
 
 0.853
SFR88058.1
Porphobilinogen synthase; Belongs to the ALAD family.
    
 0.805
SFS01987.1
Sarcosine oxidase subunit beta.
 
  
 0.783
SFR89032.1
Phosphoserine aminotransferase, putative.
 
  
 0.777
SFS12032.1
L-threonine ammonia-lyase.
    
 0.761
glyA-2
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. Also exhibits THF-independent aldolase activity toward beta- hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
 
 0.758
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.750
SFR94067.1
Glycine dehydrogenase (decarboxylating) beta subunit.
  
 
 0.750
SFR97919.1
Aminomethyltransferase.
  
 
 0.750
Your Current Organism:
Halomicrobium zhouii
NCBI taxonomy Id: 767519
Other names: CGMCC 1.10457, H. zhouii, Halobacteriaceae archaeon TBN51, Halomicrobium zhouii Yang and Cui 2012, JCM 17095, strain TBN51
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