STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFS08565.1Hypothetical protein. (339 aa)    
Predicted Functional Partners:
SFS08568.1
alpha-L-glutamate ligase, RimK family.
 
     0.864
SFR96508.1
Ribosomal protein S6--L-glutamate ligase.
 
     0.653
mfnA
Tyrosine decarboxylase / aspartate 1-decarboxylase; Catalyzes the decarboxylation of L-aspartate to produce beta- alanine; Belongs to the group II decarboxylase family. MfnA subfamily.
  
  
  0.584
SFS08544.1
Succinate dehydrogenase subunit A.
       0.558
SFS08547.1
Succinate dehydrogenase subunit B.
     
 0.557
SFS08555.1
Succinate dehydrogenase subunit C.
       0.553
SFS08551.1
Succinate dehydrogenase subunit D.
       0.552
SFR93294.1
Glutathione synthase/RimK-type ligase, ATP-grasp superfamily.
 
     0.531
SFS07863.1
Xaa-Pro aminopeptidase.
 
  
 0.470
SFS08559.1
PAS domain S-box-containing protein.
       0.466
Your Current Organism:
Halomicrobium zhouii
NCBI taxonomy Id: 767519
Other names: CGMCC 1.10457, H. zhouii, Halobacteriaceae archaeon TBN51, Halomicrobium zhouii Yang and Cui 2012, JCM 17095, strain TBN51
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.