STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMA44316.1SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)    
Predicted Functional Partners:
AMA44317.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
AMA44318.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.714
AMA47870.1
Replication protein P; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
AMA44320.1
Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.543
AMA44319.1
Amino acid ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.541
AMA44376.1
Heptose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.488
AMA47780.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
AMA44763.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.471
AMA45076.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
AMA45337.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
Your Current Organism:
Pseudomonas monteilii
NCBI taxonomy Id: 76759
Other names: ATCC 700476, CCUG 38736, CFML 90-60, CIP 104883, DSM 14164, JCM 21585, NBRC 103158, P. monteilii, Pseudomonas sp. MKP 213, Pseudomonas sp. V7SW2
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