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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmG50S rRNA methyltransferase; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. (374 aa)    
Predicted Functional Partners:
AMA44708.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.802
AMA44246.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
AMA46459.1
50S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.541
AMA44709.1
ferredoxin--NADP(+) reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.518
AMA44767.1
Uracil/xanthine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.465
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
  
  
 0.461
AMA46679.1
tRNA dihydrouridine synthase DusC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.447
AMA45159.1
Protein involved in RimO-mediated beta-methylthiolation of ribosomal protein S12 YcaO; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.439
AMA46129.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.436
queA
S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
      
 0.424
Your Current Organism:
Pseudomonas monteilii
NCBI taxonomy Id: 76759
Other names: ATCC 700476, CCUG 38736, CFML 90-60, CIP 104883, DSM 14164, JCM 21585, NBRC 103158, P. monteilii, Pseudomonas sp. MKP 213, Pseudomonas sp. V7SW2
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