Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMA45506.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)    
Predicted Functional Partners:
AMA46450.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.835
AMA44991.1
Chromosome partitioning protein ParA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.627
AMA45162.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.613
AMA47799.1
Ferrous iron transporter B; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.574
AMA45209.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.570
AMA45507.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.560
AMA46287.1
Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.511
AMA46925.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.503
AMA44144.1
Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.484
AMA46931.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.477
Your Current Organism:
Pseudomonas monteilii
NCBI taxonomy Id: 76759
Other names: ATCC 700476, CCUG 38736, CFML 90-60, CIP 104883, DSM 14164, JCM 21585, NBRC 103158, P. monteilii, Pseudomonas sp. MKP 213, Pseudomonas sp. V7SW2
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