Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMA45853.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (251 aa)    
Predicted Functional Partners:
AMA45854.1
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AMA45851.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.620
AMA45852.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.620
AMA45855.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
AMA45856.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.448
AMA45857.1
Efflux transporter periplasmic adaptor subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.438
Your Current Organism:
Pseudomonas monteilii
NCBI taxonomy Id: 76759
Other names: ATCC 700476, CCUG 38736, CFML 90-60, CIP 104883, DSM 14164, JCM 21585, NBRC 103158, P. monteilii, Pseudomonas sp. MKP 213, Pseudomonas sp. V7SW2
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