Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMA45863.1Type 2 isopentenyl-diphosphate Delta-isomerase; Catalyzes the isomerization of isopentenyl pyrophosphate to dimethylallyl diphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)    
Predicted Functional Partners:
AMA45859.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.979
AMA45860.1
Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.979
AMA45861.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.979
AMA45862.1
Zeaxanthin glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.846
AMA45864.1
Geranylgeranyl pyrophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.664
AMA44636.1
4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.612
AMA45248.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.612
AMA44638.1
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.525
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.512
AMA47083.1
Flavodoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.501
Your Current Organism:
Pseudomonas monteilii
NCBI taxonomy Id: 76759
Other names: ATCC 700476, CCUG 38736, CFML 90-60, CIP 104883, DSM 14164, JCM 21585, NBRC 103158, P. monteilii, Pseudomonas sp. MKP 213, Pseudomonas sp. V7SW2
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