STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMA46118.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (83 aa)    
Predicted Functional Partners:
AMA45712.1
Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.790
AMA47863.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.766
AMA45707.1
ImpA-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.761
AMA47831.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.752
AMA45711.1
ImcF-like family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.746
AMA45713.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.745
AMA45708.1
Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.736
AMA45709.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.733
AMA45717.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.733
AMA45716.1
Type VI secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.700
Your Current Organism:
Pseudomonas monteilii
NCBI taxonomy Id: 76759
Other names: ATCC 700476, CCUG 38736, CFML 90-60, CIP 104883, DSM 14164, JCM 21585, NBRC 103158, P. monteilii, Pseudomonas sp. MKP 213, Pseudomonas sp. V7SW2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.