Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMA47674.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)    
Predicted Functional Partners:
thrB
Homoserine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudomonas-type ThrB family.
 
    0.969
AMA47673.1
DNA polymerase I; Has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.944
AMA46556.1
Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family.
  
     0.514
AMA47422.1
Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.487
AMA45197.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0149 family.
  
     0.480
AMA45006.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
AMA47924.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
AMA46627.1
Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.469
AMA45317.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.447
AMA45318.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.447
Your Current Organism:
Pseudomonas monteilii
NCBI taxonomy Id: 76759
Other names: ATCC 700476, CCUG 38736, CFML 90-60, CIP 104883, DSM 14164, JCM 21585, NBRC 103158, P. monteilii, Pseudomonas sp. MKP 213, Pseudomonas sp. V7SW2
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