Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGL02561.1Hypothetical protein. (263 aa)    
Predicted Functional Partners:
AGL02560.1
Putative transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family.
 
    0.937
AGL02559.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
 
    0.905
AGL01130.1
Hypothetical protein.
  
     0.770
AGL02477.1
PFAM: Tetratricopeptide repeat.
  
     0.707
AGL02154.1
PFAM: Zinc ribbon domain; TIGRFAM: putative regulatory protein, FmdB family.
  
     0.700
AGL00395.1
Hypothetical protein.
  
     0.686
AGL02493.1
Hypothetical protein.
  
     0.684
AGL00314.1
Hypothetical protein.
  
     0.681
AGL02499.1
Hypothetical protein.
  
     0.669
AGL02058.1
PFAM: Pilus assembly protein, PilO.
  
     0.649
Your Current Organism:
Desulfallas gibsoniae
NCBI taxonomy Id: 767817
Other names: D. gibsoniae DSM 7213, Desulfallas gibsoniae DSM 7213, Desulfotomaculum gibsoniae DSM 7213, Desulfotomaculum sp. DSM 7213, Desulfotomaculum sp. Groll
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