STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HELO_1048Transcriptional regulator, GntR family; Uncharacterized HTH-type transcriptional regulator ydhC - Bacillus subtilis,InterPro: Bacterial regulatory protein GntR family, Specificity unclear. (340 aa)    
Predicted Functional Partners:
HELO_1049
Hydrolase, UxaA family; D-galactarate dehydratase - Escherichia coli (strain K12),InterPro: D-galactarate dehydratase/Altronate hydrolase C-terminal, Specificity unclear.
 
     0.810
HELO_3416
Tripartite Tricarboxylate Transporter (TTT) family,putative periplasmic substrate-binding protein precursor,specificity unclear.
  
     0.727
HELO_1044
Tripartite Tricarboxylate Transporter (TTT) family,putative small transmembrane protein, secondary transporter, specificity unclear.
  
     0.706
HELO_2008
Putative outer membrane protein yiaT precursor -Escherichia coli O157:H7, High confidence in function and specificity.
  
     0.610
araF
ABC-type transport system periplasmic substrate-binding protein; Y.
  
     0.593
HELO_4412
Hypothetical protein.
  
     0.532
HELO_1627
Two-component sensor hisitidine kinase, TctE-like protein.
  
     0.508
HELO_2440
Adenylate/guanylate cyclase; Uncharacterized protein R02095 - Rhizobium meliloti (Sinorhizobium meliloti), Specificity unclear.
  
    0.488
HELO_3914
Transcriptional regulator, LuxR family; Putative HTH-type transcriptional regulator in exeN 3region - Aeromonas salmonicida,InterPro: Bacterial regulatory protein LuxR family, Specificity unclear.
  
    0.455
HELO_2314
UPF0251 protein MTH_1178 - Methanobacterium thermoautotrophicum, Hypothetical protein.
  
     0.438
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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