STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HELO_1057K00243 hypothetical protein; Conserved virulence factor B - Staphylococcus haemolyticus (strain JCSC1435), High confidence in function and specificity; Belongs to the CvfB family. (246 aa)    
Predicted Functional Partners:
gshB
Glutathione synthetase - Yersinia pestis,InterPro: Glutathione synthetase prokaryotic, High confidence in function and specificity; Belongs to the prokaryotic GSH synthase family.
       0.739
secB
K03071 preprotein translocase SecB subunit; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.
       0.525
rsmE
K09761 hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.525
HELO_1056
Retinal dehydrogenase 1 - Homo sapiens (Human),InterPro: Aldehyde dehydrogenase, Specificity unclear.
       0.518
xylX2
Hypothetical protein.
       0.420
algH
K07735 putative transcriptional regulator; UPF0301 protein Csal_0058 - Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768),InterPro: Protein of unknown function DUF179, High confidence in function and specificity; Belongs to the UPF0301 (AlgH) family.
       0.406
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.