STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycgAC4-dicarboxylate anaerobic carrier; High confidence in function and specificity. (462 aa)    
Predicted Functional Partners:
HELO_1301
Hypothetical protein; Transaldolase - Leifsonia xyli subsp. xyli,Hypothetical protein.
       0.807
HELO_1302
Amidase, hydantoinase/carbamoylase family; Allantoate amidohydrolase - Escherichia coli (strain K12),InterPro: Peptidase M20/M25/M40, Specificity unclear.
     
 0.627
mleN
K03315 Na+:H+ antiporter, NhaC family; High confidence in function and specificity.
 
     0.580
rocR
Transcriptional regulatory protein tyrR -Enterobacter agglomerans (Erwinia herbicola) (Pantoea agglomerans),InterPro: Sigma-54 factor interaction domain,High confidence in function and specificity.
       0.556
arcC
Carbamate kinase; Belongs to the carbamate kinase family.
 
   
 0.492
arcA
Arginine deiminase.
 
   
 0.465
HELO_1297
Uncharacterized 50.9 kDa protein in katA 3region -Bacillus pseudofirmus, Specificity unclear.
 
     0.433
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.