STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoA-22-dehydro-3-deoxy-6-phosphogalactonatealdolase; 2-dehydro-3-deoxy-phosphogluconate aldolase -Pseudomonas aeruginosa,InterPro: KDPG and KHG aldolase,Specificity unclear. (217 aa)    
Predicted Functional Partners:
dgoK
2-dehydro-3-deoxygalactonokinase; High confidence in function and specificity.
 
  
 0.998
dgoA
Mandelate racemase/muconate lactonizing enzyme; Galactonate dehydratase - Escherichia coli (strain K12),InterPro: Mandelate racemase/muconate lactonizing enzyme, High confidence in function and specificity.
 
   
 0.891
eda
2-keto-3-deoxy-phosphogluconate aldolase.
  
  
0.858
kguK
PfkB domain protein; Probable fructokinase-3 - Arabidopsis thaliana (Mouse-ear cress),InterPro: Carbohydrate kinase PfkB, High confidence in function and specificity.
 
  
 0.696
HELO_1775
Bacterial regulatory protein GntR family, FadR subfamily, Specificity unclear.
 
   
 0.642
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
  
 0.632
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
  
 0.575
HELO_1778
TRAP-transporter large transmembrane protein,specificity unclear.
     
 0.572
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.539
HELO_1777
TRAP transporter small transmembrane protein (DctQ).
       0.507
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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