STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bchIMagnesium-chelatase 67 kDa subunit - Chlorobium tepidum,InterPro: Magnesium chelatase ChlI subunit, High confidence in function and specificity. (579 aa)    
Predicted Functional Partners:
cobN
Cobaltochelatase; High confidence in function and specificity.
 
 
 0.992
cobB
Cobyrinic acid AC-diamide synthase - Listeria innocua,InterPro: Cobyrinic acid ac-diamide synthase CbiA,High confidence in function and specificity.
 
   
 0.959
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.945
cobH
Precorrin-8X methylmutase - Pseudomonas denitrificans,InterPro: Precorrin-8X methylmutase CbiC/CobH, High confidence in function and specificity.
 
   
 0.924
cobW
Protein cobW - Pseudomonas aeruginosa,InterPro: Cobalamin synthesis protein/P47K, High confidence in function and specificity.
 
  
 0.921
HELO_4462
UPF0093 membrane protein RP883 - Rickettsia prowazekii,InterPro: Conserved hypothetical protein 701,High confidence in function and specificity.
    
 0.918
cobJ
Precorrin-3B C(17)-methyltransferase - Pseudomonas denitrificans,InterPro: Precorrin-3B C17-methyltransferase,High confidence in function and specificity.
 
   
 0.896
cobG
precorrin-3B synthase; Sulfite reductase [NADPH] hemoprotein beta-component - Enterobacter sakazakii (strain ATCC BAA-894),InterPro: Nitrite/sulfite reductase ferredoxin-like half domain, High confidence in function and specificity.
       0.883
cobI
Precorrin-2 C(20)-methyltransferase - Pseudomonas aeruginosa,InterPro: Precorrin-2 C20-methyltransferase,High confidence in function and specificity; Belongs to the precorrin methyltransferase family.
 
     0.877
HELO_2066
Lipoate-protein ligase A - Vibrio cholerae (strain ATCC 39541 / O395),InterPro: von Willebrand factor type A,Hypothetical protein.
  
 
 0.827
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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