STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcdAShort-chain dehydrogenase/reductase SDR; 3-oxoacyl-[acyl-carrier-protein] reductase -Thermotoga maritima,InterPro: Short-chain dehydrogenase/reductase SDR, Specificity unclear. (246 aa)    
Predicted Functional Partners:
fabF
3-oxoacyl-(acyl carrier protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
  0.939
fabZ
(3R)-hydroxymyristoyl-(acyl carrier protein) dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs.
 
 0.933
fabB
3-oxoacyl-[acyl-carrier-protein] synthase 1 -Escherichia coli O6,InterPro: Beta-ketoacyl synthase, High confidence in function and specificity; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
  0.928
fabB-2
Beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
   
  0.928
fabA
3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length.
  
 0.922
HELO_2335
Serine/threonine-protein phosphatase 1 regulatory subunit 10 - Rattus norvegicus (Rat), Hypothetical protein.
       0.773
HELO_3280
Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-[acyl-carrier-protein] reductase -Thermotoga maritima,InterPro: Glucose/ribitol dehydrogenase, Specificity unclear.
  
     0.737
HELO_2333
Transcriptional regulator, TetR family; Uncharacterized HTH-type transcriptional regulator ycfQ - Escherichia coli (strain K12),InterPro: Bacterial regulatory protein TetR HTH motif, Specificity unclear.
 
    0.672
HELO_4099
Cytochrome P450; Fatty acid synthase - Bos taurus (Bovine),InterPro: Cytochrome P450, High confidence in function and specificity.
  
 
 0.595
betC
Choline-sulfatase - Rhizobium meliloti (Sinorhizobium meliloti),InterPro: Sulfatase, High confidence in function and specificity.
   
 
 0.472
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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