STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lipA-3Capsule polysaccharide modification protein lipA -Neisseria meningitidis serogroup B,InterPro: Capsule polysaccharide biosynthesis, High confidence in function and specificity. (738 aa)    
Predicted Functional Partners:
wcbO
Capsule polysaccharide export protein kpsS -Escherichia coli,InterPro: Capsule polysaccharide biosynthesis, High confidence in function and specificity.
   
 0.969
wcbQ
Putative capsular polysaccharide biosynthesis protein; Uncharacterized protein HI0275 - Haemophilus influenzae, High confidence in function and specificity.
 
     0.949
HELO_2392
ABC-type transport system permease protein.
 
  
 0.927
HELO_2394
Homolog to capsule polysaccharide export inner-membrane protein.
 
  
 0.920
HELO_2393
ABC-type transport system ATP-binding protein; Spermidine/putrescine import ATP-binding protein potA - Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523),InterPro: ABC transporter,High confidence in function and specificity.
 
  
 0.917
kpsD
Polysaccharide export protein; Polysialic acid transport protein kpsD precursor -Escherichia coli,InterPro: Polysaccharide export protein,High confidence in function and specificity.
 
  
 0.913
wcbP
Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-[acyl-carrier-protein] reductase -Thermotoga maritima,InterPro: Short-chain dehydrogenase/reductase SDR, High confidence in function and specificity.
 
     0.912
HELO_3597
ABC-type transport system permease protein.
  
  
 0.573
HELO_2400
phytanoyl-CoA dioxygenase; Rhamnogalacturonate lyase precursor - Dickeya dadantii (strain 3937) (Erwinia chrysanthemi (strain 3937)), Hypothetical protein.
 
     0.542
HELO_2412
Hypothetical protein predicted by Glimmer/Critica; Hemin uptake protein hemP - Yersinia enterocolitica,Conserved hypothetical protein.
       0.490
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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