STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
agmRTwo component transcriptional regulator, LuxR family; Transcriptional regulatory protein degU - Bacillus subtilis,InterPro: Response regulator receiver, High confidence in function and specificity. (227 aa)    
Predicted Functional Partners:
HELO_3700
Hybrid signal transduction histidine kinase K -Dictyostelium discoideum (Slime mold),InterPro: Histidine kinase, Specificity unclear.
 
 
 0.896
gacS
Signal transduction histidine-protein kinase barA -Shigella flexneri,InterPro: Histidine kinase, High confidence in function and specificity.
  
 
 0.882
HELO_3559
Probable two-component sensor; Phytochrome 1 - Selaginella martensii (Martenss spike moss),InterPro: Na+/solute symporter, Specificity unclear.
 
 
 0.866
HELO_2815
PAS/PAC sensor hybrid histidine kinase; Autoinducer 2 sensor kinase/phosphatase luxQ -Vibrio cholerae,InterPro: Histidine kinase, Specificity unclear.
 
 
 0.822
aldh
Aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
  
    0.698
adh2
Alcohol dehydrogenase, zinc-containing.
       0.682
HELO_1072
Signal transduction histidine-protein kinase barA -Escherichia coli O157:H7,InterPro: Histidine kinase,Specificity unclear.
 
 
 0.563
HELO_2741
Periplasmic sensor signal transduction histidine kinase; Osmoregulated proline transporter - Bacillus subtilis,InterPro: Na+/solute symporter, Specificity unclear.
 
 
 
 0.544
narX
Nitrate/nitrite sensor protein narX - Escherichia coli O157:H7,InterPro: Histidine kinase, High confidence in function and specificity.
 
 
 0.531
HELO_1706
Diguanylate cyclase with PAS/PAC sensor; Uncharacterized protein yegE - Escherichia coli (strain K12),InterPro: GGDEF, Specificity unclear.
 
 
 0.478
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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