STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhiNHypothetical protein; Putative glycosyl hydrolase yteR - Bacillus subtilis, High confidence in function and specificity. (379 aa)    
Predicted Functional Partners:
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.759
ygiK
Possible integral membrane transport protein; Sialic acid TRAP transporter permease protein siaT -Haemophilus influenzae, High confidence in function and specificity.
       0.725
xynA
alpha-N-arabinofuranosidase; Beta-xylosidase - Bacillus pumilus (Bacillus mesentericus),InterPro: Glycoside hydrolase family 43, High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.659
HELO_2965
Uncharacterized protein MJ1311 - Methanocaldococcus jannaschii (Methanococcus jannaschii), Hypothetical protein.
 
    0.605
abnA
Arabinan endo-1,5-alpha-L-arabinosidase; Beta-xylosidase - Bacillus pumilus (Bacillus mesentericus), High confidence in function and specificity; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.593
abfA
alpha-L-arabinofuranosidase; Alpha-N-arabinofuranosidase - Bacillus stearothermophilus (Geobacillus stearothermophilus), High confidence in function and specificity.
 
  
 0.580
HELO_2805
Alpha-N-arabinofuranosidase 2 precursor -Streptomyces chartreusis, Specificity unclear; Belongs to the glycosyl hydrolase 43 family.
  
     0.579
abf2
Large protein with C-terminal homology to alpha-arabinofuranosidase II; Alpha-N-arabinofuranosidase 2 precursor -Streptomyces chartreusis, High confidence in function and specificity.
  
     0.493
HELO_1097
Alpha-glucosidase 2 - Bacillus thermoamyloliquefaciens,InterPro: Glycoside hydrolase family 31, Specificity unclear; Belongs to the glycosyl hydrolase 31 family.
 
   
 0.492
kduD
2-deoxy-D-gluconate 3-dehydrogenase; High confidence in function and specificity.
 
   
 0.441
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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