Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cytRTranscriptional regulator, LacI family; HTH-type transcriptional repressor purR - Vibrio vulnificus,InterPro: Periplasmic binding protein/LacI transcriptional regulator, High confidence in function and specificity. (332 aa)    
Predicted Functional Partners:
fruB
Phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
   
 
 0.808
nagF
Phosphoenolpyruvate-protein phosphotransferase.
   
 
 0.798
gltB
Glutamate synthase (NADPH), large subunit; Catalyzes the conversion of L-glutamine and 2-oxoglutarate into two molecules of L-glutamate.
    
 
 0.743
yisS
Oxidoreductase domain protein; Uncharacterized protein y4hM precursor - Rhizobium sp. (strain NGR234),InterPro: Oxidoreductase N-terminal,High confidence in function and specificity.
 
     0.568
HELO_3205
Rhizopine catabolism protein mocC - Rhizobium meliloti (Sinorhizobium meliloti), Specificity unclear.
 
    0.556
idnK
Gluconokinase.
  
 
 0.547
yegT
nucleoside:H+ symporter; Putative nucleoside transporter yegT - Escherichia coli (strain K12),InterPro: Nucleoside:H+ symporter, High confidence in function and specificity.
 
   
 0.475
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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