STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yegTnucleoside:H+ symporter; Putative nucleoside transporter yegT - Escherichia coli (strain K12),InterPro: Nucleoside:H+ symporter, High confidence in function and specificity. (410 aa)    
Predicted Functional Partners:
HELO_3205
Rhizopine catabolism protein mocC - Rhizobium meliloti (Sinorhizobium meliloti), Specificity unclear.
 
  
 0.904
yisS
Oxidoreductase domain protein; Uncharacterized protein y4hM precursor - Rhizobium sp. (strain NGR234),InterPro: Oxidoreductase N-terminal,High confidence in function and specificity.
 
   
 0.892
HELO_1211
Protein of unknown function DUF1080; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase - Photorhabdus luminescens subsp. laumondii, Hypothetical protein.
 
     0.793
HELO_1208
Xylose isomerase domain protein TIM barrel; Putative hydroxypyruvate isomerase - Xenopus laevis (African clawed frog),InterPro: Twin-arginine translocation pathway signal, Specificity unclear; Belongs to the hyi family.
 
     0.775
HELO_1210
Hypothetical protein; Gluconate 2-dehydrogenase subunit 3 precursor -Pectobacterium cypripedii (Erwinia cypripedii),InterPro: Twin-arginine translocation pathway signal, Specificity unclear.
 
     0.761
lacA
Glucose-methanol-choline oxidoreductase; Gluconate 2-dehydrogenase flavoprotein precursor -Pectobacterium cypripedii (Erwinia cypripedii),Specificity unclear.
 
     0.757
HELO_1207
Protein ygbM - Escherichia coli (strain K12),Specificity unclear.
 
    0.613
HELO_2592
Uncharacterized protein SCO4629 - Streptomyces coelicolor, High confidence in function and specificity.
  
    0.569
cytR
Transcriptional regulator, LacI family; HTH-type transcriptional repressor purR - Vibrio vulnificus,InterPro: Periplasmic binding protein/LacI transcriptional regulator, High confidence in function and specificity.
 
   
 0.481
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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