STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HELO_3208HTH-type transcriptional regulator blaA - Proteus vulgaris,InterPro: LysR substrate binding domain, High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family. (330 aa)    
Predicted Functional Partners:
HELO_3740
Transcriptional regulator; Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.745
HELO_1489
Transcriptional regulator, LysR family; Uncharacterized HTH-type transcriptional regulator yhjC - Escherichia coli (strain K12),InterPro: LysR substrate binding domain, Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.721
HELO_3256
HTH-type transcriptional regulator alsR - Bacillus subtilis,InterPro: LysR substrate binding domain,Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.719
HELO_2890
Transcriptional regulator, LysR family; Probable RuBisCO transcriptional regulator -Gracilaria tenuistipitata var. liui (Red alga),InterPro: LysR substrate binding domain, Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.717
lysR
HTH-type transcriptional regulator alsR - Bacillus subtilis,InterPro: LysR substrate binding domain, High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.
  
     0.714
HELO_3981
Transcriptional regulator, LysR family; Probable RuBisCO transcriptional regulator -Anabaena variabilis (strain ATCC 29413 / PCC 7937),InterPro: LysR substrate binding domain, Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.711
irgB
Transcriptional regulator, LysR family; Iron-regulated virulence regulatory protein irgB -Vibrio cholerae (strain ATCC 39541 / O395),InterPro: LysR substrate binding domain, High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.
  
     0.707
metR
K03576 LysR family transcriptional regulator,regulator for metE and metH; Probable RuBisCO transcriptional regulator -Anabaena variabilis (strain ATCC 29413 / PCC 7937),InterPro: LysR substrate binding domain, High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.
  
     0.680
HELO_2948
Transcriptional regulator, LysR family; Probable RuBisCO transcriptional regulator -Anabaena variabilis (strain ATCC 29413 / PCC 7937),InterPro: LysR substrate binding domain, High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.
  
     0.679
HELO_2902
Transcriptional regulator, LysR-family; Uncharacterized HTH-type transcriptional regulator yhjC - Escherichia coli (strain K12),InterPro: LysR substrate binding domain, Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.673
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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