STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HELO_3209Uncharacterized protein ycbB - Escherichia coli (strain K12),InterPro: Putative peptidoglycan binding domain 1, Specificity unclear. (546 aa)    
Predicted Functional Partners:
HELO_3210
Hypothetical protein; Ferrochelatase mitochondrial precursor - Mus musculus (Mouse), Hypothetical protein.
 
   
 0.855
erfK
ErfK/YbiS/YcfS/YnhG family protein; Protein erfK/srfK precursor - Escherichia coli (strain K12),InterPro: ErfK/YbiS/YcfS/YnhG, High confidence in function and specificity.
 
  
 0.511
HELO_3211
Major facilitator superfamily transporter.
       0.402
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.