STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HELO_3273Inner membrane protein yeiU - Escherichia coli (strain K12),InterPro: PA-phosphatase related phosphoesterase, Specificity unclear. (247 aa)    
Predicted Functional Partners:
HELO_2700
K09953 hypothetical protein; Probable DNA primase small subunit - Aeropyrum pernix, Hypothetical protein.
  
  
 0.911
yjdB
UPF0141 membrane protein yjdB - Escherichia coli (strain K12),InterPro: Sulfatase, High confidence in function and specificity.
     
 0.905
HELO_3274
O-antigen polymerase; Specificity unclear.
       0.773
HELO_2594
Chaperone protein dnaK - Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210), High confidence in function and specificity.
  
     0.667
HELO_2042
Hypothetical protein predicted by Glimmer/Critica; Inner membrane protein yqjE - Escherichia coli O157:H7, Specificity unclear.
  
     0.652
HELO_3850
Porin gram-negative type; Outer membrane protein C precursor - Escherichia coli (strain K12), Specificity unclear.
  
     0.644
yqjD
Protein of unknown function DUF883, ElaB; Uncharacterized protein ygaM - Escherichia coli O157:H7, High confidence in function and specificity.
  
     0.574
yeeA
Inner membrane protein yeeA - Escherichia coli (strain K12), High confidence in function and specificity.
  
     0.572
wabH
Glycosyl transferase group 1; Glycogen synthase - Synechococcus sp. (strain WH7803),InterPro: Glycosyl transferase group 1, High confidence in function and specificity.
       0.563
HELO_3276
Hypothetical protein; Vitellogenin precursor [Contains: Vitellin light chain - Bombyx mori (Silk moth), Hypothetical protein.
       0.563
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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