STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HELO_3278Gluconate 2-dehydrogenase (acceptor); Alcohol dehydrogenase cytochrome c subunit precursor - Acetobacter europaeus (Gluconacetobacter europaeus),InterPro: Cytochrome c alcohol dehydrogenase-like subunit, Specificity unclear. (449 aa)    
Predicted Functional Partners:
gnd
Gluconate dehydrogenase.
 
 
 0.943
HELO_3279
Gluconate 2-dehydrogenase subunit 3 precursor -Pectobacterium cypripedii (Erwinia cypripedii),InterPro: Twin-arginine translocation pathway signal, Specificity unclear.
 
  
 0.922
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 
 0.893
petB
Ubiquinol--cytochrome c reductase, cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.870
ccoO
InterPro: Cytochrome C oxidase mono-heme subunit/FixO, Hypothetical protein.
  
 
 0.860
ccoN
Cytochrome c oxidase subunit 1 homolog bacteroid -Bradyrhizobium japonicum,InterPro: Cytochrome c oxidase cbb3-type subunit I, High confidence in function and specificity; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.849
ctaE
Cytochrome c oxidase subunit 3 - Hippopotamus amphibius (Hippopotamus),InterPro: Cytochrome c oxidase subunit III, High confidence in function and specificity.
  
 
 0.776
cyoC
Cytochrome o ubiquinol oxidase subunit 3 -Escherichia coli O6,InterPro: Cytochrome c oxidase subunit III, High confidence in function and specificity.
  
 
 0.776
bisC
Molybdopterin oxidoreductase; Trimethylamine-N-oxide reductase precursor - Vibrio vulnificus (strain YJ016),InterPro: Molybdopterin oxidoreductase, High confidence in function and specificity; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.758
HELO_2472
K09796 hypothetical protein; Putative lipoprotein Lxx21020 precursor - Leifsonia xyli subsp. xyli,InterPro: Protein of unknown function DUF461, High confidence in function and specificity.
  
 
 0.741
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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