STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HELO_3496Xylulokinase; Glycerol kinase 2 - Thermotoga maritima,InterPro: Carbohydrate kinase FGGY, Specificity unclear. (516 aa)    
Predicted Functional Partners:
rpe
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.937
xylB
Xylulokinase; Glycerol kinase 2 - Thermotoga maritima,InterPro: Xylulokinase, High confidence in function and specificity.
  
  
 
0.925
HELO_3497
Short chain dehydrogenase; 3-oxoacyl-[acyl-carrier-protein] reductase -Thermotoga maritima,InterPro: Short-chain dehydrogenase/reductase SDR, Specificity unclear.
  
  
 0.821
rhaM
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
  
  
 0.819
rbsC
ABC-type transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.732
adh6
Alcohol dehydrogenase, zinc-binding.
 
 
 0.696
rbtD
Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-[acyl-carrier-protein] reductase -Thermotoga maritima,InterPro: Short-chain dehydrogenase/reductase SDR, High confidence in function and specificity.
    
  0.640
rbsA
ABC-type transport system ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
  
 0.634
mipB
Transaldolase B; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
  
 
 0.631
rbsB
ABC-type transport system periplasmic substrate-binding protein.
 
  
 0.602
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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