STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nucADNA/RNA non-specific endonuclease; High confidence in function and specificity. (283 aa)    
Predicted Functional Partners:
HELO_3931
Beta-lactamase-like; Ribonuclease Z - Bacillus cereus (strain ATCC 10987),InterPro: Beta-lactamase-like, High confidence in function and specificity.
   
   0.886
HELO_3530
Transcriptional regulator, AsnC family; Uncharacterized HTH-type transcriptional regulator PH1519 - Pyrococcus horikoshii, Specificity unclear.
       0.803
fdsB
NADH dehydrogenase (quinone); NADH-quinone oxidoreductase subunit F - Rickettsia bellii (strain OSU 85-389),InterPro: Respiratory-chain NADH dehydrogenase 51 kDa subunit, High confidence in function and specificity.
   
    0.715
HELO_3630
Epimerase; High confidence in function and specificity.
    
   0.666
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.531
recJ
Single-stranded-DNA-specific exonuclease recJ -Escherichia coli (strain K12),InterPro: Bacterial RecJ exonuclease, High confidence in function and specificity.
  
     0.442
ycgB
Uncharacterized protein ycgB - Escherichia coli (strain K12),InterPro: SpoVR, High confidence in function and specificity.
       0.434
HELO_3532
K09786 hypothetical protein; UPF0229 protein Csal_0882 - Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768),InterPro: Protein of unknown function DUF444, High confidence in function and specificity; Belongs to the UPF0229 family.
       0.408
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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