STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HELO_3898Short chain dehydrogenase; 3-oxoacyl-[acyl-carrier-protein] reductase -Thermotoga maritima,InterPro: Short-chain dehydrogenase/reductase SDR, Specificity unclear. (257 aa)    
Predicted Functional Partners:
HELO_4099
Cytochrome P450; Fatty acid synthase - Bos taurus (Bovine),InterPro: Cytochrome P450, High confidence in function and specificity.
  
 
 0.595
entA
2,3-dihydroxybenzoate-2,3-dehydrogenase; 3-oxoacyl-[acyl-carrier-protein] reductase -Thermotoga maritima,InterPro: Short-chain dehydrogenase/reductase SDR, High confidence in function and specificity.
  
     0.516
HELO_3895
Transcriptional regulator, LysR family; Uncharacterized HTH-type transcriptional regulator yhjC - Escherichia coli (strain K12),InterPro: LysR substrate binding domain, Specificity unclear; Belongs to the LysR transcriptional regulatory family.
 
     0.495
HELO_3280
Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-[acyl-carrier-protein] reductase -Thermotoga maritima,InterPro: Glucose/ribitol dehydrogenase, Specificity unclear.
  
     0.485
HELO_3897
Hypothetical protein predicted by Glimmer/Critica.
       0.477
betC
Choline-sulfatase - Rhizobium meliloti (Sinorhizobium meliloti),InterPro: Sulfatase, High confidence in function and specificity.
   
 
 0.472
HELO_3896
Low temperature requirement A; Uncharacterized protein RA0937 - Rhizobium meliloti (Sinorhizobium meliloti), High confidence in function and specificity.
 
     0.460
HELO_1659
Peptidoglycan-binding LysM; Uncharacterized protein DR_0888 - Deinococcus radiodurans,InterPro: Peptidoglycan-binding LysM, Conserved hypothetical protein.
  
     0.457
entB
Isochorismatase - Bacillus subtilis,InterPro: Isochorismatase hydrolase family, High confidence in function and specificity.
 
  
 0.447
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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