STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcaQTranscriptional regulator, LysR family; Probable RuBisCO transcriptional regulator -Anabaena variabilis (strain ATCC 29413 / PCC 7937),InterPro: LysR substrate binding domain, High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family. (310 aa)    
Predicted Functional Partners:
pcaH
Protocatechuate 34-dioxygenase beta chain -Pseudomonas putida,InterPro: Intradiol ring-cleavage dioxygenase, High confidence in function and specificity.
 
     0.952
pcaG
Protocatechuate 34-dioxygenase alpha chain -Pseudomonas putida,InterPro: Intradiol ring-cleavage dioxygenase, High confidence in function and specificity.
 
     0.940
HELO_3958
4-carboxymuconolactone decarboxylase; 3-oxoadipate enol-lactonase 2 - Acinetobacter sp. (strain ADP1),InterPro: Alpha/beta hydrolase fold,Specificity unclear.
 
   
 0.819
HELO_3981
Transcriptional regulator, LysR family; Probable RuBisCO transcriptional regulator -Anabaena variabilis (strain ATCC 29413 / PCC 7937),InterPro: LysR substrate binding domain, Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.734
HELO_1454
K03566 LysR family transcriptional regulator,glycine cleavage system transcriptional activator; HTH-type transcriptional activator ampR -Enterobacter cloacae,InterPro: LysR substrate binding domain, High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.
  
     0.705
HELO_4222
Transcriptional regulator, LysR family; Probable RuBisCO transcriptional regulator -Anabaena variabilis (strain ATCC 29413 / PCC 7937),InterPro: LysR substrate binding domain, Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.668
HELO_2890
Transcriptional regulator, LysR family; Probable RuBisCO transcriptional regulator -Gracilaria tenuistipitata var. liui (Red alga),InterPro: LysR substrate binding domain, Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.643
HELO_3926
Transcriptional regulator, LysR family; Glycine cleavage system transcriptional activator -Escherichia coli O157:H7,InterPro: LysR substrate binding domain, High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.
  
     0.637
HELO_1514
Transcriptional regulator, LysR family; Probable RuBisCO transcriptional regulator -Anabaena variabilis (strain ATCC 29413 / PCC 7937),InterPro: LysR substrate binding domain, Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.605
HELO_2580
Transcriptional regulator, LysR family; Probable RuBisCO transcriptional regulator -Anabaena variabilis (strain ATCC 29413 / PCC 7937),InterPro: LysR substrate binding domain, Specificity unclear; Belongs to the LysR transcriptional regulatory family.
  
     0.600
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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