STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfc15Alginate biosynthesis protein algK precursor -Pseudomonas syringae pv. tomato, Hypothetical protein. (162 aa)    
Predicted Functional Partners:
tfc11
Hypothetical protein predicted by Glimmer/Critica.
 
     0.972
tfc12
Hypothetical protein.
 
     0.972
tfc13
Hypothetical protein; DNA-directed RNA polymerase subunit beta -Acidothermus cellulolyticus (strain ATCC 43068 / 11B),Hypothetical protein.
 
     0.972
tfc14
Putative secreted protein; Pleckstrin homology-like domain family B member 1 -Rattus norvegicus (Rat), High confidence in function and specificity.
 
     0.972
tfc16
Probable conjugal transfer protein trbE part 2 -Rhizobium sp. (strain NGR234), Hypothetical protein.
 
     0.891
tfc7
Hypothetical protein; C-C chemokine receptor-like 2 - Mus musculus (Mouse), Hypothetical protein.
 
     0.864
tfc6
Hypothetical protein; Dihydroxy-acid dehydratase - Mycobacterium sp. (strain JLS), Hypothetical protein.
 
     0.863
tfc10
Hypothetical protein predicted by Glimmer/Critica.
       0.859
tfc3
Regulator of G-protein signaling 9-binding protein -Danio rerio (Zebrafish) (Brachydanio rerio), Hypothetical protein.
 
     0.849
tfc5
Hypothetical protein; S-adenosylmethionine:tRNA ribosyltransferase-isomerase - Vibrio parahaemolyticus,Specificity unclear.
 
     0.849
Your Current Organism:
Halomonas elongata
NCBI taxonomy Id: 768066
Other names: H. elongata DSM 2581, Halomonas elongata ATCC 33173, Halomonas elongata DSM 2581, Halomonas elongata str. DSM 2581, Halomonas elongata strain DSM 2581
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